For consistency with the interpolation functions, the following mode In this article we will learn methods of utilizing Gaussian Filter to reduce noise in images using Python programming language. Calculate a multidimensional rank filter. Because heart rates should never be above about 220 beats per minute, I want to filter out all noise above 220 bpm. Roughly equivalent to [func(input[labels == i]) for i in index]. when the filter overlaps a border. distance_transform_edt(input[, sampling, …]), generate_binary_structure(rank, connectivity). Calculate a 1-D filter along the given axis. returned array. This function uses the Difference of Gaussians method for applying band-pass filters to multi-dimensional arrays. Iterate a structure by dilating it with itself. Python scipy.ndimage.median_filter() Examples The following are 30 code examples for showing how to use scipy.ndimage.median_filter(). Syntax: scipy.ndimage.spline_filter1d(input, order=3, axis=-1, output=) Parameters. The following are 30 code examples for showing how to use scipy.ndimage.convolve().These examples are extracted from open source projects. append (ndimage. See footprint, below. Python ndimage.morphology.binary_fill_holes() Method Examples The following example shows the usage of ndimage.morphology.binary_fill_holes method. Blurring is widely used to reduce the noise in the image. to footprint=np.ones((n,m)). Multidimensional binary dilation with the given structuring element. Example 21. Scikit-image: image processing¶. percentile_filter(input, percentile[, size, …]). Python scipy.ndimage.convolve() Examples ... responses = np.array([ndimage.convolve(img, fl) for fl in filter_battery]) if filter_battery.shape[0] > 1: # usually for rotational edge detectors and we tae the maximal response response = np.max(responses, axis=0) else: response = responses[0] return response . © Copyright 2008-2020, The SciPy community. Multidimensional binary closing with the given structuring element. Find the positions of the maximums of the values of an array at labels. 2 Replies. Calculate a multidimensional laplace filter using the provided second derivative function. You can vote up the ones you like or vote down the ones you don't like, and go to the original project or source file by following the links above each example. I read the scipy docs for the function here : scipy.ndimage.uniform_filter1d.However, when I tried using it, I couldn't wrap around my head on it's working. input: array_like – The input array. 29 Mar 2020 • 7 min read. the same constant value, defined by the cval parameter. Python uniform_filter - 30 examples found. ‘reflect’. The input is extended by replicating the last pixel. A nice function in scipy.ndimage is the generic_filter. input: array_like – The input array order: int – The order of the spline, default is 3. It uses a filter based on the derivative of a Gaussian in order to compute the intensity of the gradients.The Gaussian reduces the effect of noise present in the image. The input is extended by filling all values beyond the edge with Filtered array. 새 배열 (month_f)은 이전 배열과 동일합니다. Generate a binary structure for binary morphological operations. These are filtered by a spline filter. moon2 = ndimage. The standard deviations of the Gaussian filter are given for each axis as a sequence, or as a single number, in which case it is equal for all axes.''' rotate(input, angle[, axes, reshape, …]), shift(input, shift[, output, order, mode, …]), spline_filter(input[, order, output, mode]), spline_filter1d(input[, order, axis, …]). Python scipy.ndimage.gaussian_filter() Examples The following are 30 code examples for showing how to use scipy.ndimage.gaussian_filter(). convolve(input, weights[, output, mode, …]), convolve1d(input, weights[, axis, output, …]). class PIL.ImageFilter. Hello, How did you read your image in? maximum_position(input[, labels, index]). I converted 220/minute into 3.66666666 Hertz and then converted that Hertz to rad/s to get 23.0383461 rad/sec. fourier_gaussian(input, sigma[, n, axis, output]). sigma: 标量或标量序列。就是高斯函数里面的 ,具体看下面的高斯滤波的解释. This method is used to calculate a 1-D spline filter along the given axis. Ignored if footprint is given. shape, but also which of the elements within this shape will get I was a bit unexpected behavior using gaussian_filter, especially on image boundaries - corners. Author: Emmanuelle Gouillart. You can vote up the ones you like or vote down the ones you don't like, and go to the original project or source file by following the links above each example. These examples are extracted from open source projects. Calculate a multidimensional maximum filter. Multidimensional gradient magnitude using Gaussian derivatives. Python scipy.ndimage.filters 模块, convolve1d() 实例源码. We adjust size to the number distance_transform_cdt(input[, metric, …]). SciPys maximum_filter is one of them.. The valid values and their behavior is as follows: The input is extended by reflecting about the edge of the last Python gaussian_filter1d - 30 examples found. Apply watershed from markers using image foresting transform algorithm. 이미지 데이터를 읽은 다음 scipy.ndimage의 중간 값 필터로 이미지를 반복하는 스크립트가 있습니다. Python scipy.ndimage 模块, maximum_filter() 实例源码. with length equal to the number of dimensions of the input array, face() blurred_face = ndimage. median_filter(input[, size, footprint, …]). imread ('./moonlanding.png'). The derivative2 parameter must be a callable with the following signature: derivative2(input, axis, output, mode, cval, *extra_arguments, **extra_keywords) The extra_arguments and extra_keywords arguments can be used to pass extra arguments and keywords that are passed to derivative2 at each call. For instance consider the local filter where the neighborhood is a 19 by 19 window and the resulting value is the mean of this neighborhood: a simple uniform linear filter. Use 0 for a min filter, size * size / 2 for a median filter, size * size-1 for a max filter, etc. Non-local filters. gaussian_filter (moon, sigma = 1) # 均值中间填充 可以加权重. Let us now perform a few operations using SciPy ndimage. difference_of_gaussians¶ skimage.filters.difference_of_gaussians (image, low_sigma, high_sigma=None, *, mode='nearest', cval=0, multichannel=False, truncate=4.0) [source] ¶ Find features between low_sigma and high_sigma in size.. Scipy library main repository. Calculate a 1-D uniform filter along the given axis. One can directly use ‘ndimage’ of scipy to compute the sobel filtering of the input image as follows: dx = ndimage.sobel(im, 0) # horizontal derivative dy = ndimage.sobel(im, 1) # vertical derivative mag = np.hypot(dx, dy) # magnitude mag *= 255.0 / np.max(mag) # normalize Or your can write the function by yourself and … Python scipy.ndimage.median_filter() Examples The following are 30 code examples for showing how to use scipy.ndimage.median_filter(). 154 155 The standard-deviations of the Gaussian filter are given for each 156 axis as a sequence, or as a single number, in which case it is 157 equal for all axes. Multidimensional Laplace filter using Gaussian second derivatives. In particular, these are some of the core packages: NumPy Base N-dimensional array package SciPy library Fundamental library for scientific computing Matplotlib Comprehensive 2-D plotting IPython Enhanced interactive console SymPy Symbolic mathematics … You can rate examples to help us improve the quality of examples. For Here are some codes, where a is the 3D image with size (874, 1150, 1150), and mf is the module: pyplot as plt from scipy import ndimage 使用中值滤波,高斯滤波处理图片 moon = plt. An order of 1, 2, or 3 corresponds to convolution with the first, second or third derivatives of a Gaussian. You can vote up the ones you like or vote down the ones you don't like, and go to the original project or source file by following the links above each example. passed to the filter function. Interested in software architecture and machine learning. scipy.ndimage.maximum_filter (input, size = None, footprint = None, output = None, mode = 'reflect', cval = 0.0, origin = 0) [source] ¶ Calculate a multidimensional maximum filter. Calculate the center of mass of the values of an array at labels. Python OpenCV tutorial for building image filters with image transformation techniques. input pixel. These are the top rated real world Python examples of scipyndimage.uniform_filter extracted from open source projects. The ImageFilter module contains definitions for a pre-defined set of filters, which can be be used with the Image.filter() method. Calculate the standard deviation of the values of an N-D image array, optionally at specified sub-regions. When I applied median filter ,scipy.ndimage.filters.median_filter to my 3D image with size (874, 1150, 1150), it runs so slowly. Gradient magnitude using a provided gradient function. These examples are extracted from open source projects. Calculate the median of the values of an array over labeled regions. standard_deviation(input[, labels, index]). Either size or footprint must be defined. Professional software engineer since 2016. This mode is also sometimes referred to as whole-sample prewitt(input[, axis, output, mode, cval]), rank_filter(input, rank[, size, footprint, …]). shape (10,10,10), and size is 2, then the actual size used is footprint is a boolean array that specifies (implicitly) a Blurring. morphological_gradient(input[, size, …]), morphological_laplace(input[, size, …]), white_tophat(input[, size, footprint, …]). Calculate a 1-D maximum filter along the given axis. I read the docs, ran the example over there in the Python Shell, used my own example but still no progress. generic_laplace(input, derivative2[, …]). Calculate a 1-D correlation along the given axis. correlate(input, weights[, output, mode, …]), correlate1d(input, weights[, axis, output, …]). separable. scipy.ndimage.filters.gaussian_filter() 多维高斯滤波器 scipy.ndimage.filters.gaussian_filter(input, sigma, order=0, output=None, mode='reflect', cval=0.0, truncate=4.0) Parameters: input:输入到函数的是 … The array in which to place the output, or the dtype of the © Copyright 2008-2020, The SciPy community. Process to Apply a Gauss filter. Multidimensional ellipsoid Fourier filter. kernel의 사이즈는 양수이면서 홀수로 지정을 해야 합니다. 我们从Python开源项目中,提取了以下7个代码示例,用于说明如何使用scipy.ndimage.gaussian_filter1d()。 minimum_position(input[, labels, index]). Denoising an image with the median filter¶. [Python source code] Other rank filter: ndimage.maximum_filter, ndimage.percentile_filter. Default fourier_ellipsoid(input, size[, n, axis, output]). This mode is also sometimes referred to as half-sample Calculate the minimums and maximums of the values of an array at labels, along with their positions. Calculate a multidimensional median filter. You can vote up the ones you like or vote down the ones you don't like, and go to the original project or source file by following the links above each example. Example #Import required image modules from PIL import Image, ImageFilter #Import all the enhancement filter from pillow from PIL.ImageFilter import ( BLUR, CONTOUR, DETAIL, EDGE_ENHANCE, EDGE_ENHANCE_MORE, EMBOSS, FIND_EDGES, SMOOTH, … The rank filter sorts all pixels in a window of the given size, and returns the rank’th value. Controls the placement of the filter on the input array’s pixels. Project: scipy Source File: test_c_api.py. 7 Examples 3. correlate_sparse¶ skimage.filters.correlate_sparse (image, kernel, mode='reflect') [source] ¶ Compute valid cross-correlation of padded_array and kernel.. This section addresses basic image manipulation and processing using the core scientific modules NumPy and SciPy. footprint array, optional. Python Scipy Multidimentional image processing (scipy.ndimage) Article Creation Date : 24-May-2019 03:39:57 AM 2.6.8.15. Thus size=(n,m) is equivalent binary_dilation(input[, structure, …]). These examples are extracted from open source projects. These are the top rated real world Python examples of scipyndimage.gaussian_filter1d extracted from open source projects. imshow (moon, cmap = 'gray') '''sigma : scalar or sequence of scalars Standard deviation for Gaussian kernel. Array of weights, same number of dimensions as input. Authors: Emmanuelle Gouillart, Gaël Varoquaux. Multidimensional binary opening with the given structuring element. be specified along each axis. Calculate the histogram of the values of an array, optionally at labels. I am trying to filter a noisy heart rate signal with python. More posts by Marius Borcan. Either size or footprint must be defined. generic_filter1d(input, function, filter_size). Multidimensional Gaussian fourier filter. Syntax: scipy.ndimage.spline_filter1d(input, order=3, axis=-1, output=) Parameters. Calculate a greyscale erosion, using either a structuring element, or a footprint corresponding to a flat structuring element. 高斯滤波gaussian_filter; plt. What is filtering … 2.6.8.15. This allows you to quickly make a prototype of a filter and test it on image. Python SciPy – ndimage.spline_filter1d() function. size scalar or tuple, optional. Parameters: size – The kernel size, in pixels. Exercise: denoising. minimum_filter(input[, size, footprint, …]). The input is extended by reflecting about the center of the last the number of dimensions of the input array, different shifts can scipy.ndimage.filters.gaussian_filter() 多维高斯滤波器 scipy.ndimage.filters.gaussian_filter(input, sigma, order=0, output=None, mode='reflect', cval=0.0, truncate=4.0) Parameters: input:输入到函数的是矩阵 … The order of the filter along each axis is given as a sequence of integers, or as a single number. rank – What pixel value to pick. An order 159 of 0 corresponds to convolution with a Gaussian kernel. Otherwise, a single mode string must be provided. 7 Examples 3. Find the positions of the minimums of the values of an array at labels. It's not-a-number, so don't use it where a number is expected! 2.6. 그러나 나는 작동하지 않는 것 run filtering.py 필터링으로 스크립트를 실행하려고 할 때. Default value is Contribute to scipy/scipy development by creating an account on GitHub. 我们从Python开源项目中,提取了以下4个代码示例,用于说明如何使用scipy.ndimage.maximum_filter()。 SciPy (pronounced “Sigh Pie”) is a Python-based ecosystem of open-source software for mathematics, science, and engineering. The Canny filter is a multi-stage edge detector. different modes can be specified along each axis. weights: array_like. We can perform a filter operation and see the change in the image. Marius Borcan. The mode parameter determines how the input array is extended Calculate the minimum of the values of an array over labeled regions. symmetric. Multidimensional binary erosion with a given structuring element. The following are 30 code examples for showing how to use scipy.ndimage.filters.convolve().These examples are extracted from open source projects. View license generic_gradient_magnitude(input, derivative). Compute a 1D filter along the given axis using the provided raw kernel. fourier_shift(input, shift[, n, axis, output]), fourier_uniform(input, size[, n, axis, output]), affine_transform(input, matrix[, offset, …]), geometric_transform(input, mapping[, …]), map_coordinates(input, coordinates[, …]). scipy.ndimage.filters.gaussian_filter() 多维高斯滤波器. e.g., r scipy.ndimage.filters.convolve¶ scipy.ndimage.filters.convolve(input, weights, output=None, mode='reflect', cval=0.0, origin=0) [source] ¶ Multidimensional convolution. The input array. I thought about going into the SciPy internals but since these are implementation details and might change without notice or deprecation it's probably not worth it. Calculate a greyscale dilation, using either a structuring element, or a footprint corresponding to a flat structuring element. sinat_39045958的博客. Python OpenCV: Building Instagram-Like Image Filters. position, to define the input to the filter function. binary_opening(input[, structure, …]). the shape that is taken from the input array, at every element Python scipy.ndimage 模块, gaussian_filter1d() 实例源码. Calculate the maximum of the values of an array over labeled regions. plt. Pre-processed images can hep a basic model achieve high accuracy when compared to a more complex model trained on images that were not pre-processed. N-D Laplace filter based on approximate second derivatives. Multidimensional Laplace filter using Gaussian second derivatives. from scipy import misc face = misc. Multidimensional binary hit-or-miss transform. Calculate a multidimensional filter using the given function. box filter는 동일한 값으로 구성된 kernel을 사용하지만, Gaussian Filter는 Gaussian함수를 이용한 Kernel을 적용합니다. Following python example applies SMOOTH filter to the given image. Calculate a multidimensional percentile filter. 즉, kernel 행렬의 값을 Gaussian 함수를 통해서 수학적으로 생성하여 적용합니다. The array is convolved with the given kernel. Ignored if footprint is given. Let us consider the following example. (2,2,2). to the right. binary_propagation(input[, structure, mask, …]). 반복에서 나는 새로운 배열을 만듭니다. Project: scipy Source File: test_c_api.py. names can also be used: Value to fill past edges of input if mode is ‘constant’. Try to avoid nans with functions that don't explicitly state they have special nan handling. watershed_ift(input, markers[, structure, …]). Python scipy.ndimage.filters.uniform_filter() Examples The following are 30 code examples for showing how to use scipy.ndimage.filters.uniform_filter(). 2 thoughts on “ A simple implementation of sobel filtering in Python ” JT Hiquet February 28, 2017 at 8:18 pm. __package__ = 'ndimage' Imports: math, numpy, _ni_support, _nd_image. minimum_filter1d(input, size[, axis, …]). Image manipulation and processing using Numpy and Scipy¶. Last Updated : 12 Nov, 2020; This method is used to calculate a 1-D spline filter along the given axis. Python scipy.ndimage.uniform_filter() Examples The following are 26 code examples for showing how to use scipy.ndimage.uniform_filter(). 3.3. scipy.ndimage.interpolation.shift()介绍 在学习过程中遇到的,网上查资料又介绍得不够详细看不太明白,只能自己调一下参数观察具体功能 该函数有三个参数 第一个参数是输入,数组类型 第二个参数是偏移量([行,列]) 第三个参数是填充数 示例: import numpy as np from scipy.ndimage.interpolation import shift … dataCube = scipy.ndimage.filters.gaussian_filter(dataCube, 3, truncate=8) Is there a way for me to normalize this, or do something so that my original values are still in this new dataCube? A property with filtering is that if you submit an image with a single 1, the output would be the actual Then, potential edges are thinned down to 1-pixel curves by removing non-maximum pixels of the gradient magnitude. The output … 我们从Python开源项目中,提取了以下16个代码示例,用于说明如何使用scipy.ndimage.filters.convolve1d()。 An order of 0 corresponds to convolution with a Gaussian kernel. Calculate a multidimensional maximum filter. labeled_comprehension(input, labels, index, …). SciPyにはndimageという画像処理用のモジュールが用意されているらしい。中にはgaussian_filter, fourier_gaussian, percentile_filter, geometric_transform等、なんか面白そうな機能が用意されている。 とりあえずガウシアンフィルタを使ってみる。 maximum_filter(input[, size, footprint, …]). histogram(input, min, max, bins[, labels, index]). positive values shifting the filter to the left, and negative ones Example 1. Has the same shape as input. Contribute to scipy/scipy development by creating an account on GitHub. size gives grey_opening(input[, size, footprint, …]), iterate_structure(structure, iterations[, …]). I am not necessarily tied to using a Gaussian filter, if that is not the best approach. N-D Laplace filter using a provided second derivative function. 这篇文章主要介绍了Python图像处理模块ndimage用法,结合实例形式分析了Python图像处理模块ndimage基本功能及常见的图形运算操作实现技巧,需要的朋友可以参考下 Did you use ndimage.imread to open the image? When footprint is given, size is ignored. is 0.0. By passing a sequence of modes gaussian_filter(input, sigma[, order, …]), gaussian_filter1d(input, sigma[, axis, …]), gaussian_gradient_magnitude(input, sigma[, …]). We would be using the following image for demonstration: A screenshot of a segment of windows explorer. Passionate software engineer since ever. A simple check would be to declare a 2D array of zeroes except for one coefficient in the centre which is set to 1, then apply the laplace function to it. By default an array of the same dtype as input Calculate a 1-D spline filter along the given axis. These examples are extracted from open source projects. A sequence of modes (one per axis) is only supported when the footprint is Calculate the mean of the values of an array at labels. You can vote up the ones you like or vote down the ones you don't like, and go to the original project or source file by following the links above each example. pixel. generic_filter(input, function[, size, …]). This example shows the original image, the noisy image, the denoised one (with the median filter) and the difference between the two. symmetric. scipy.ndimage.filters.gaussian_filter(input, sigma, order=0, output=None, mode='reflect', cval=0.0, truncate=4.0)Parameters: input:输入到函数的是矩阵. The calculation speed apparently highly depends on the footprint size. Scipy library main repository. pixel. I'm failing to understand exactly how the reflect mode handles my arrays. Python ndimage.maximum_filter怎麽用?Python ndimage.maximum_filter使用的例子?那麽恭喜您, 這裏精選的方法代碼示例或許可以為您提供幫助。您... python_数据_scipy_ndimage. Example 1. These examples are extracted from open source projects. binary_erosion(input[, structure, …]). black_tophat(input[, size, footprint, …]), distance_transform_bf(input[, metric, …]). Example 1 File: run_ovary_egg-segmentation.py. # rotation from scipy import misc,ndimage face = misc.face() rotate_face = ndimage.rotate(face, 45) import matplotlib.pyplot as plt plt.imshow(rotate_face) plt.show() The above program will generate the following output. By voting up you can indicate which examples are most useful and appropriate. Denoising an image with the median filter¶. Parameters: input: array_like. This function is fast when kernel is large with many zeros.. See scipy.ndimage.correlate for a description of cross-correlation.. Parameters image ndarray, dtype float, shape (M, N,[ …,] P) The input array. cupyx.scipy.ndimage.generic_filter Compute a multi-dimensional filter using the provided raw kernel or reduction kernel. Input array to filter. SciPyにはndimageという画像処理用のモジュールが用意されているらしい。中にはgaussian_filter, fourier_gaussian, percentile_filter, geometric_transform等、なんか面白そうな機能が用意されている。 とりあえずガウシアンフィルタを使ってみる。 Python Data Science Handbook: full text in Jupyter Notebooks - jakevdp/PythonDataScienceHandbook github.com median_filter_img = ndimage.median_filter(img, 3)により、メディアンフィルタをかけた画像を得ることができる。 You can vote up the ones you like or vote down the ones you don't like, and go to the original project or source file by following the links above each example. output: ndarray, optional. These examples are extracted from open source projects. In the process of using Gaussian Filter on an image we firstly define the size of the Kernel/Matrix that would be used for … zoom(input, zoom[, output, order, mode, …]). This package contains various functions for multidimensional image ndimage start import numpy as np import matplotlib. 如果您正苦于以下问题:Python filters.maximum_filter方法的具体用法?Python filters.maximum_filter怎么用?Python filters.maximum_filter使用的例子?那么恭喜您, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在模块scipy.ndimage.filters的用法示例。 Python img.filter(SMOOTH) method. A simple implementation of sobel filtering in Python. Some of the operations covered by this tutorial may be useful for other kinds of multidimensional array processing than image processing. You can rate examples to help us improve the quality of examples. This chapter describes how to use scikit-image on various image processing tasks, and insists on the link with other scientific Python modules such as NumPy and SciPy. imshow (moon2, cmap = 'gray') Other local non-linear filters: Wiener (scipy.signal.wiener), etc. Calculate a 1-D convolution along the given axis. Calculate the variance of the values of an N-D image array, optionally at specified sub-regions. Distance transform for chamfer type of transforms. generic_filter (input, function[, size, …]) Calculate a multidimensional filter using the given function. Python scipy.ndimage.filters.uniform_filter() Examples The following are 30 code examples for showing how to use scipy.ndimage.filters.uniform_filter(). Distance transform function by a brute force algorithm. def cloud_shadow_stats_old (in_name, bounds, cloud_val = 1500, shadow_val = 2000, land_val = 1000): """ Input parameter: in_name - The full path of a Geotiff format image. Python scipy.ndimage.filters.convolve() Examples The following are 30 code examples for showing how to use scipy.ndimage.filters.convolve(). append (img > filters. Marius Borcan. Filters. sobel(input[, axis, output, mode, cval]), uniform_filter(input[, size, output, mode, …]), uniform_filter1d(input, size[, axis, …]). grey_erosion(input[, size, footprint, …]). It won´t be fast but you get results fast. See footprint, below. I'm trying to explore 3D image analysis using Python by scipy.ndimage. This example shows the original image, the noisy image, the denoised one (with the median filter) and the difference between the two. Here are the examples of the python api scipy.ndimage.generic_filter taken from open source projects. Calculate a 1-D minimum filter along the given axis. By passing a sequence of origins with length equal to Calculate a multidimensional minimum filter. binary_closing(input[, structure, …]). Let us discuss how filters help in image processing. grey_closing(input[, size, footprint, …]), grey_dilation(input[, size, footprint, …]). PIL is the Python Imaging Library which provides the python interpreter with image editing capabilities. Calculate the sum of the values of the array. Here are the examples of the python api scipy.ndimage.generic_filter taken from open source projects. maximum_filter1d(input, size[, axis, …]). Multidimensional binary propagation with the given structuring element. These are filtered by a spline filter. I don’t want to use opencv. These examples are extracted from open source projects. Parameters input array_like. The input is extended by wrapping around to the opposite edge. binary_fill_holes(input[, structure, …]), binary_hit_or_miss(input[, structure1, …]). A value of 0 (the default) centers the filter over the pixel, with By voting up you can indicate which examples are most useful and appropriate. gaussian_filter(face, sigma = 3) of dimensions of the input array, so that, if the input array is will be created. processing. gaussian_laplace(input, sigma[, output, …]). The order of the filter along each axis is 158 given as a sequence of integers, or as a single number. ... # 1. gaussian ppl. Create a binary image (of 0s and 1s) with several objects (circles, ellipses, squares, or random shapes). gaussian_filter (img, 1)) # 2. otsu ppl. Map the input array to new coordinates by interpolation. scikit-image is a Python package dedicated to image processing, and using natively NumPy arrays as image objects. 153 """Multi-dimensional Gaussian filter.
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